Guys, thanks for the extra ideas.
Went back this afternoon, found the problem, and got a solution.
First thing I did was measure the pushrod heights at full lift and the spring depression on the other side. Push rod height on high and low was identical to all the others (give or take a mm or so). The spring compression was not as significant on number 6. And yes it is the intake not the exhaust valve.

So everything on the bottom end appeared to be correct.
I pulled out the rockers and I'll let the photo's tell the story.
All the following photos were taken with the rockers at the same height.
Problem one is 2nd from left. (can see file mark were I tried to get spanner to fit)
2nd from the front. Notice the bend. Valve ends are all level (at the same height).
2nd from the back.
Last one. 2nd from the right.
Tried to get a picture of underneath but came out too blurry.

There is a crack running right across, under the rocker. It's bent already and opens up more when placed under pressure. Thus the difference in spring compression when under load on that valve.
FB Mad, thanks for the info, it makes me a little worried about the lifters. Maybe I should replace them with the ones out of the other motor to ensure they are in the correct positions. I previously measured the Pushrods and they appear to be all the same height, so I don't think they matter. It's bent (a bloody good bend) and cracked (to allow even more bending).
Anthony, thanks for the previous offer but I won't need any parts at this stage.

Got them off the other motor.